Migrate to new Gitea instance (gitea.wbd-rd.nl)
- Update all submodule URLs from gitea.centraal.wbd-rd.nl to gitea.wbd-rd.nl - Add settler as proper submodule in .gitmodules - Add agent skills, function anchors, decisions, and improvements - Add Docker configuration and scripts - Add manuals and third_party docs - Update .gitignore with secrets and build artifacts - Remove stale .tgz build artifact Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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.agents/skills/evolv-biological-process-engineering/SKILL.md
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.agents/skills/evolv-biological-process-engineering/SKILL.md
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---
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name: evolv-biological-process-engineering
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description: Engineer biological wastewater process behavior for EVOLV nodes. Use when implementing or reviewing reactor/settler biology, ASM-style kinetics, oxygen demand, nitrification/denitrification, sludge behavior, calibration assumptions, and biologically plausible constraints.
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---
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# EVOLV Biological Process Engineering
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## Mission
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Keep EVOLV biological process models physically plausible, calibratable, and operationally useful.
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## Harness Execution Contract
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- Ground changes in current biology/state variables and connected control topics.
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- Define invariants before edits:
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- biological mass-balance intent is preserved
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- model assumptions remain explicit and traceable
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- degraded behavior remains availability-first and bounded
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- Validate with deterministic tests and representative operating scenarios.
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## Scope
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- `nodes/reactor/`
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- `nodes/settler/`
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- `nodes/pumpingStation/` (where biology interacts with flow/retention assumptions)
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- Related reaction modules and utilities under `nodes/*/src/`
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## Workflow
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1. Identify biological state variables, units, and expected ranges.
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2. Map kinetic pathways (growth, decay, transfer, conversion) and rate constraints.
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3. Verify oxygen/temperature dependencies and fallback behavior.
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4. Check integration stability for configured time-step and resolution choices.
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5. Confirm outputs remain interpretable for control and dashboard consumers.
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## Standards
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- Keep state vectors explicit and index mappings documented.
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- Avoid silent clipping/coercion without test coverage and rationale.
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- Preserve topic/payload compatibility unless migration is defined.
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- Record calibration assumptions and required field data.
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## Test Expectations
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Cover:
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- kinetic branch behavior under representative and boundary conditions
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- non-negativity and boundedness safeguards
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- temperature and oxygen transfer sensitivity
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- time-step/resolution edge behavior and stability warnings
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## Deliverables
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Return:
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- biological assumptions and constraints used
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- changed files/tests and evidence
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- calibration notes and unresolved biological uncertainties
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Decision interview triggers:
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- altered biology assumptions that can change plant behavior
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- parameter/default changes with startup or compliance impact
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- compatibility breaks in biological outputs or topic contracts
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interface:
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display_name: "EVOLV Biological Process Engineering"
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short_description: "Wastewater biology and kinetics specialist"
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default_prompt: "Map biological state variables and kinetics in the impacted EVOLV nodes, define non-negotiable biological invariants, validate oxygen/temperature/time-step behavior, and return test-backed recommendations with calibration assumptions and risks."
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